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Genotyping projects

Step-by-step guide: A typical genotyping service project

Request quotation up
The customer submits a request for a quotation or a general request for pricing information. When requesting this, please include details regarding the number of SNPs (or InDels) and number of DNA samples that you wish to genotype.
LGC will email the customer with a quotation for their genotyping project and will include a sequence submission form and a DNA sample submission form.

Review quote & provide purchase order up
The customer reviews their quotation and if happy, submits a purchase order to the provided address.

Project manager assigned up
At this stage LGC will assign a project manager to act as the customers’ primary contact for this and any subsequent genotyping projects.

Provide sample and SNP submission forms up
Next, the customer should complete and return the sequence submission form with sequence(s) of interest and polymorphism(s) marked to identify the SNPs/InDels that they are interested in. The completed sequence submission form can be e-mailed directly to the project manager.

Assay design & preparation up
LGC use the sequence information submitted by the customer to design the KASP assays; for this, we use our proprietary Kraken software. The oligos are ordered, and KASP assays are prepared. These assays are validated against our panel of DNA samples where applicable (human assays only).

DNA shipment to LGC up
Meanwhile, the customer will send their DNA samples to LGC, following our guidelines on sample shipment.  Customers must ensure that they have completed a DNA sample submission form to identify their samples and e-mailed it to the project manager.

Sample plate preparation up
Once DNA has been received, LGC prepare sample plates for genotyping using either 384-well or 1536-well format plates depending on the number of SNPs/Indels and samples being genotyped.

Assays run on sample plates up
When all of the sample plates have been prepared and the assays have been made (and validated) the assays will be dispensed into the genotyping sample plates. The plates are then sealed, and thermally cycled in one of our Hydrocycler instruments. Plates are then read to obtain fluorescence data.

Genotyping cluster data scored and results provided up
The fluorescence data read from the sample plates is plotted and genotypes are assigned to samples based on clusters.

Finally, the project manager will send the analysed results to the customer. Results are typically provided in two formats, one that can be viewed graphically using our SNPViewer software and the other that displays the results in a simple grid format.

For more information regarding the amount of DNA required for a genotyping project, please click here.  

All our service project costs include:

  • Labour
  • Consumables
  • Reformatting of DNA where necessary
  • Data analysis and reporting
  • All reagents required for genotyping.

Please contact our customer service team and let us show you how we can drive even more from your genotyping research budget.

Make an enquiry Genotyping

Related downloads

Species tested with KASP 156KB

Organisms genotyped using KASP

KASP explanation 132KB

Guide of how KASP genotyping chemistry works

Genotyping results 832 kB

Fact sheet

A guide to the analysis of KASP genotyping data using cluster plots 1.1 MB

Cluster plot analysis

Related links

Link Submitting samples